Preprints

.

AB12PHYLO: an integrated pipeline for Maximum Likelihood phylogenetic inference from ABI trace data

Leo Kaindl, Corinn Small, Remco Stam*
BioRxiv https://doi.org/10.1101/2021.03.01.433007

Multi-omics approach highlights differences between functional RLP classes in Arabidopsis thaliana

Christina E. Steidele, Remco Stam*
BioRxiv https://doi.org/10.1101/2020.08.07.240911

*Corresponding Author

Peer reviewed Publications

.

Quantitative resistance differences between and within natural populations of Solanum chilense against the oomycete pathogen Phytophthora infestans

Parvinderdeep Kahlon, Melissa Verin, Ralph Hückelhoven, Remco Stam* (2021) Ecology and Evolution
https://doi.org/10.1002/ece3.7610

Allelic variants of the NLR protein Rpi-chc1 differentially recognise members of the Phytophthora infestans PexRD12/31 effector superfamily through the leucine-rich repeat domain

Daniel Monino-Lopez, Maarten Nijenhuis, Linda Kodde, Sophien Kamoun, Hamed Salehian, Kyrylo Schentsnyi, Remco Stam, Anoma Lokossou, Ahmed Abd-El-Haliem, Richard GF Visser, Jack H Vossen (2021) The Plant Journal
https://doi.org/10.1111/tpj.15284

ONT-based draft genome assembly and annotation of Alternaria atra

Bhawna Bonthala, Corinn Sophia Small, Maximilian Anton Lutz, Alexander Graf, Stefan Krebs, German Sepúlveda, Remco Stam* (2021) Molecular Plant Microbe Interactions (first view)
https://doi.org/10.1094/MPMI-01-21-0016-A

A complex resistance locus in Solanum americanum recognizes a conserved Phytophthora effector

Kamil Witek, Xiao Lin, Hari S Karki, Florian Jupe, Agnieszka I Witek, Burkhard Steuernagel, Remco Stam, Cock Van Oosterhout, Sebastian Fairhead, Jonathan M Cocker, Shivani Bhanvadia, William Barrett, Tianqiao Song, Vivianne GAA Vleeshouwers, Laurence Tomlinson, Brande BH Wulff, Jonathan DG Jones (2021) Nature Plants  7, 198–200
https://doi.org/10.1038/s41477-021-00854-9

Population Genomic- and Phylogenomic-Enabled Advances to Increase Insight Into Pathogen Biology and Epidemiology

Remco Stam*, Pierre Gladieux, Boris A. Vinatzer, Erica M. Goss, Neha Potnis, Thierry Candresse, and Marin Talbot Brewer (2021) Phytopathology 111: 8-11
https://doi.org/10.1094/PHYTO-11-20-0528-FI

Population Genomics of Filamentous Plant Pathogens—A Brief Overview of Research Questions, Approaches, and Pitfalls

S. Everhart, N. Gambhir and R. Stam* (2021) Phytopathology, 111:12-22
https://doi.org/10.1094/PHYTO-11-20-0527-FI

A conserved oomycete CRN effector targets tomato TCP14-2 to enhance virulence

R. Stam, G. B. Motion, V. Martinez-Heredia, P.C. Boevink and E. Huitema (2021), Molecular PlantMicorbe Interactions 34 (3), 309–318.
https://doi.org/10.1094/MPMI-06-20-0172-R

Population studies in the wild tomato species Solanum chilense reveal maintenance and loss of resistance at geographically distinct locations

P. S. Kahlon, S. Mindih Seta, G. Zander, D. Scheikl, R. Hückelhoven, M.H.A.J Joosten, and R. Stam* (2020) Proceedings of the Royal Society B. 28720202723
https://doi.org/10.1098/rspb.2020.2723

The de novo reference genome and transcriptome assemblies of the wild tomato species Solanum chilense Highlights Birth and Death of NLR Genes Between Tomato Species

R. Stam*, T. Nosenko, A.C. Hörger, W. Stephan, M. Seidel, Jose M.M. Kuhn, G Haberer, A Tellier (2019) G3: Genes, Genomes, Genetics 9 (12) 3933-3941
https://doi.org/10.1534/g3.119.400529

The current epidemic of the barley pathogen Ramularia collo-cygni derives from a recent population expansion and shows global admixture

R. Stam*, H. Sghyer,  A. Tellier,  M. Heß, R. Hückelhoven, (2019) Phytopathology 109 (12) :2161-2168
https://doi.org/10.1094/PHYTO-04-19-0117-R

Subsets of NLR genes show differential signatures of adaptation during colonisation of new habitats

R. Stam*, G.A. Silva-Arias, A Tellier (2019) New Phytologist 224 (1): 367-379
https://doi.org/10.1111/nph.16017

A new reference genome shows the one-speed genome structure of the barely pathogen Ramularia collo-cygni

R, Stam*, M. Münsterkötter, S.D. Pophaly SD, L. Fokkens, H. Sghyer, U. Güldener, R. Hückelhoven, M. Hess (2018) . Genome Biology and Evolution 10 (12) 3243-3249
https://doi.org/10.1093/gbe/evy240

Good Riddance? Breaking Disease Susceptibility in the Era of New Breeding Technologies

S. Engelhardt, R. Stam, R. Hückelhoven (2018) Agronomy 8 (7), 114
https://doi.org/10.3390/agronomy8070114

When resistance gene pyramids are not durable—the role of pathogen diversity

R. Stam*, B. McDonald (2018) Molecular Plant Pathology 19 (3) 521-524
https://doi.org/10.1111/mpp.12636

An NMRA-like protein regulates gene expression in Phytophthora capsici to drive the infection cycle on tomato

J. Pham, R. Stam, M. Csukai, E. Huitema (2018) Molecular Plant Microbe Interactions 31(6) 665-677
https://doi.org/10.1094/MPMI-07-17-0193-R

Diversification of defensins and NLRs in Arabidopsis species by different evolutionary mechanisms

M. Mondragón-Palomino, R. Stam, A. John-Arputharaj and T. Dresselhaus (2017) BMC Evolutionary Biology 17:255
https://doi.org/10.1186/s12862-017-1099-4

Quantitative analysis of the tomato nuclear proteome during Phytophthora capsici infection unveils regulators of immunity

A.J. M. Howden, R. Stam , V.M. Heredia, … , and E. Huitema (2017) New Phytologist 215 (1) 309-322
doi: 10.1111/nph.14540

The wild tomato species Solanum chilense shows variation in pathogen resistance between geographically distinct populations

R. Stam*, D. Scheikl, A. Tellier (2017) PeerJ 5, e2910
https://doi.org/10.7717/peerj.2910

Pooled Enrichment Sequencing Identifies Diversity and Evolutionary Pressures at NLR Resistance Genes within a Wild Tomato Population.

R. Stam*, D. Scheikl, A. Tellier (2016) Genome biology and evolution 8 (5), 1501-1515
https://doi.org/10.1093/gbe/evw094

The Top 10 oomycete pathogens in molecular plant pathology

S. Kamoun, O. Furzer, …, R. Stam, et al. (2015) Molecular Plant Pathology 16 (4), 413-434.
DOI:10.1111/mpp.12190

The role of effectors in nonhost resistance to filamentous plant pathogens.

R. Stam*, S. Mantelin, H. McLellan and G. Thilliez (2014) Frontiers in Plant Science 5:582
https://doi.org/10.3389/fpls.2014.00582

Effector specialization following a host jump in the Irish potato famine pathogen lineage

S. Dong, R. Stam, L.M. Cano,…, and S. Kamoun, (2014) Science 343 (6170) 552-555
DOI:10.1126/science.1246300

Mp10 and Mp42 from the aphid species Myzus persicae trigger plant defenses in Nicotiana benthamiana through different activities

P.A. Rodriguez, R. Stam, T. Warbroek and J.I.B. Bos (2014) Molecular Plant-Microbe Interactions 27 (1) 30-39
DOI:10.1094/MPMI-05-13-0156-R

Characterisation of cell death inducing Phytophthora capsici CRN effectors suggests diverse activities in the host nucleus

R. Stam, A.J.M. Howden, M. Delgado-Cerezo, T.M.M.M Amaro, G.B Motion, J. Pham and E. Huitema (2013) Frontiers in Plant-Microbe interactions 4 -387
DOI: 10.3389/fpls.2013.00387

Phytophthora capsici-tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle

J. Jupe, R. Stam, A.J.M. Howden, J.A.Morris, R. Zhang, P. Hedley and E. Huitema (2013) Genome Biology 14(6):R63
DOI:10.1186/gb-2013-14-6-r63

Identification and characterisation of CRN effectors in Phytophthora capsici shows modularity and functional diversity

R. Stam, J. Jupe, A.J.M. Howden, J.A. Morris, P.C. Boevink, P. Hedley and E. Huitema (2013) PLOS ONE 8(3) e59517
DOI: 10.1371/journal.pone.0059517

Sequencing and Mapping Reveal Loss of Heterozygosity as a Mechanism for Rapid Adaptation in the Vegetable Pathogen Phytophthora capsici

K.H. Lamour, J. Mudge, …, R. Stam, et al. (2012) Molecular Plant Microbe Interactions 25 (10) 1350-1360
https://doi.org/10.1094/MPMI-02-12-0028-R

The oomycete broad-host-range pathogen Phytophthora capsici

K. H. Lamour, R. Stam, J. Jupe, and E. Huitema. (2012) Molecular Plant Pathology 13 (4) 329-337
0.1111/j.1364-3703.2011.00754.x

Recent developments in effector biology of filamentous plant pathogens

R Oliva, J. Win, S. Raffaelle …, R Stam, et al. (2010) Cellular Microbiology 12(6) 705-715
DOI: 10.1111/j.1462-5822.2010.01471.x

*Corresponding Author

Other

Menschen und grüne Biotechnologie: Perspektiven für Nachhaltigkeit

R. Stam (2020) in Mensch und Technik – Perspektiven einer zukunftsfähigen Gesellschaft; Susanne Hartard, Axel Schaffer (eds.)
ISBN 978-3-7316-1425-8  pdf